FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences786311
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA14430.18351517402147496No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA13340.16965297445921526No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC13040.1658376901760245No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT12210.15528207032586344No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC9670.1229793300615151No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG9150.11636617063731781No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9130.11611181835177176No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC8110.10313985178892321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)