FastQCFastQC Report
Wed 28 Dec 2022
EGAF00007544110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333015
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC9350.28076813356755703No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA8570.2573457652057715No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG7950.2387279852258907No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6830.20509586655255768No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA5750.17266489497470083No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC5120.153746828220951No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG4970.14924252661291534No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4230.127021305346606No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG4100.12311757728630843No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC3920.11771241535666563No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA3420.10269807666321337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)