FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290414
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7230.24895494018883388No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCT7130.24551158002024698No Hit
GTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCT6970.24000220375050788No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA6670.22967212324474717No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA6420.22106372282327985No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA6210.21383266646924737No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC6200.21348833045238869No Hit
ACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCA6030.2076346181657909No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC5720.1969602016431715No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG5530.19041781732285634No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT5370.1849084410531173No Hit
CCTAGTTTGTTAGGGACGGATCGGAGAATTGTGTAGGCGAATAGGAAATAT4670.16080491987300888No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC4660.16046058385615017No Hit
GCATGGTTTGTTCTAATGCTTCTTGTTGGCAGCTGCCACCTGTCCGGCGAT4580.15770589572128066No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA4490.15460687156955244No Hit
GGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGT4330.14909749529981337No Hit
GCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACC4330.14909749529981337No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG4200.14462112708065036No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3720.1280929982714332No Hit
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTA3720.1280929982714332No Hit
GGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGG3610.1243053020859876No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT3440.11845158979938983No Hit
CTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGCC3420.11776291776567245No Hit
GCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCGTGTGAGGGTG3390.11672990971509638No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGA3360.1156969016645203No Hit
CCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAG3260.11225354149593339No Hit
GATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC3250.1119092054790747No Hit
GCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGG3210.11053186141163993No Hit
ATGTTGTAGCCACAGCTGGAGCCTGAGTCCGCTGCACGGAGACTCTGGTGT3210.11053186141163993No Hit
GGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGA3190.10984318937792255No Hit
AGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGT3180.10949885336106387No Hit
GGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTT3110.10708850124305302No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3050.10502248514190086No Hit
CCTATTGATAGGACATAGTGGAAGTGGGCTACAACGTAGTACGTGTCGTGT3010.1036451410744661No Hit
GCTAAGTTGGTTGCTTTTTGGTGATTAGTCAAAGAGACCAAATCCCATATC3000.10330080505760741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)