FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences597777
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG35200.5888483498026855No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA27020.4520080230587661No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCT25530.42708234006995927No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA19730.3300561915229258No Hit
ACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCA19270.32236101422436797No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA18850.31533498277785865No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC18490.3093126701094221No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT18270.3056323679231553No Hit
GCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACC17440.2917475914931488No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC15880.265650903263257No Hit
ATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAAC15850.26514904387422067No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA15520.25962859059482046No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC14790.24741667879493523No Hit
CCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAG14710.2460783870908382No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14030.23470290760601362No Hit
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTA13690.22901516786360132No Hit
GGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTT13530.22633858445540728No Hit
GGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGT13050.21830883423082523No Hit
GCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCGTGTGAGGGTG12980.21713782898974032No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC12830.2146285320445584No Hit
GCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGG12500.20910807876515825No Hit
GGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGG12150.2032530525597338No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG11970.20024189622551555No Hit
GATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTT11920.1994054639104549No Hit
CCTATTGATAGGACATAGTGGAAGTGGGCTACAACGTAGTACGTGTCGTGT11450.19154300014888495No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGA11270.18853184381466667No Hit
CCTTTAATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCG11240.1880299844256303No Hit
GTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCT11100.1856879739434605No Hit
GATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC11080.18535340101743628No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAAC10940.1830113905352665No Hit
CCTAGTTTGTTAGGGACGGATCGGAGAATTGTGTAGGCGAATAGGAAATAT10940.1830113905352665No Hit
GGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGA9980.16695189008610234No Hit
AGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGT9570.16009314510260514No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT9370.15674741584236263No Hit
GTTATAAAAGAGGTTTAGTCAAAAAGACCAAAGCCCATGTCATCATCAGAC9000.15055781671091392No Hit
GCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGT8700.14553922282055015No Hit
CCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCT8540.1428626394123561No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8460.14152434770825909No Hit
TCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGG8410.14068791539319847No Hit
CCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATC8250.13801133198500443No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG8200.1371748996699438No Hit
GGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCC8180.13684032674391955No Hit
GATTTATTATATGGTTGTTACACTCGGCCACAAATAAACACAGAAATAGTC8060.13483288918777403No Hit
TATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCC7310.12228640446186455No Hit
GCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTT7280.12178454507282817No Hit
TCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTT7250.12128268568379179No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT7130.11927524812764626No Hit
CCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACA7050.11793695642354925No Hit
AGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTA6850.11459122716330672No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6680.11174735729210057No Hit
GGTGATTCCTAGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTG6550.10957263327294293No Hit
GGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT6350.1062269040127004No Hit
ATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTT6350.1062269040127004No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG6340.10605961754968826No Hit
AGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCGG6300.10539047169763975No Hit
GCTTACTGGTTGTCCTCCGATTCAGGTTAGAATGAGGAGGTCTGCGGCTAG6290.10522318523462763No Hit
GCATGGTTTGTTCTAATGCTTCTTGTTGGCAGCTGCCACCTGTCCGGCGAT6280.1050558987716155No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATT6210.10388489353053061No Hit
CCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGA6170.10321574767848211No Hit
CCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAA6150.10288117475245787No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT6140.10271388828944573No Hit
CCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCT6110.10221202890040935No Hit
CCTCAGATTCATTGAACTAGGTCTGTCCCAATGTATGGGATGGCGGATAGT6000.10037187780727597No Hit
GAGTGAATGGGGCTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGT5990.10020459134426384No Hit
AGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGAA5980.1000373048812517No Hit
CCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTC5980.1000373048812517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)