FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551716
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA30190.5472018212268631No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCT26720.4843071435303671No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC24770.44896287220236497No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA23970.43446265832421027No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA23940.4339189003037795No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC22740.41216857948654745No Hit
GCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACC19320.35018016515743605No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT18800.34075502613663555No Hit
ACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCA17940.3251672962176192No Hit
GGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGT14020.25411624821466117No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC13530.24523486721429144No Hit
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTA13310.24124730839779887No Hit
GGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGG13280.24070355037736807No Hit
GGTAGAGGGGGTGTTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA13010.23580972819349086No Hit
GCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGG12390.22457206243792094No Hit
CCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAG12090.21913448223361293No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT10900.19756541408985784No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG10890.19738416141638088No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG10770.19520912933465767No Hit
CCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATC10290.18650900100776485No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAGA9840.17835263070130283No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT9780.17726511466044126No Hit
GATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC9390.17019626039484081No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC9370.16983375504788695No Hit
GGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGA9330.1691087443539792No Hit
CCTATTGATAGGACATAGTGGAAGTGGGCTACAACGTAGTACGTGTCGTGT9310.16874623900702534No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT9200.1667524595987791No Hit
GGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTT9060.164214922170102No Hit
AGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGT9020.16348991147619427No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8980.16276490078228653No Hit
GCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGA8350.15134598235323973No Hit
GCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGT8260.1497147082919473No Hit
GCTAAGTTGGTTGCTTTTTGGTGATTAGTCAAAGAGACCAAATCCCATATC8200.1486271922510857No Hit
CCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCT7960.1442771280876393No Hit
CCTAGAGCTACCTGTGGAGCAACCTGCTCAGATACATCAAACATGGAGACA7690.13938330590376208No Hit
TATGGCAGGGGGTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCC7290.13213319896468473No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG7160.1297769142094846No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC7100.128689398168623No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT6690.1212580385560687No Hit
GTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGCT6640.12035177518868403No Hit
ATGTTGTAGCCACAGCTGGAGCCTGAGTCCGCTGCACGGAGACTCTGGTGT6600.1196267644947763No Hit
GCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGGAG6290.11400793161699135No Hit
CCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACA6170.11183289953526813No Hit
GCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATC6100.11056413082092961No Hit
GGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT5860.1062140666574832No Hit
CCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCT5740.10403903457575998No Hit
ATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTT5700.10331402388185226No Hit
GATAGTTAAGTGGGATCGAGACATGTAAGCAGCATCATGGAGGTTTGAAGA5570.10095773912665211No Hit
GGAAAAAGGAGGTCTTCTCGGGCCCGAGACCAGTGTTCTGGGCTGGCACAG5520.10005147575926744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)