FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61391
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10051.6370477757325992No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4890.7965336938639215No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC3640.5929207864344936No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA2890.470753041976837No Hit
GTGAATGGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAGC1730.28180026388232804No Hit
GCTTAGCACAGGGCTGCAATTGTCGTCGCCGTTAACCCGTCCACGATGGAG1730.28180026388232804No Hit
GCAACAATAACTGGAGAGATACATATATTTCATATATATAGAAATGACGGG1450.2361909726181362No Hit
GTCCACGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGCCGCCGC1440.23456206935870078No Hit
CTACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGA1340.21827303676434656No Hit
CCTACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCG1300.2117574237266049No Hit
TGCAATTGGAGCCATTTATTCTCCTGGCTCAACGTAAAGAAAAAGAAAGAA1270.20687071394829862No Hit
ATTGCCAGAGGCAGGTTTCAGACGACTCGGTGAGAATCGCTGCCGCCGCCT1190.19383948787281524No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1180.1922105846133798No Hit
GCTGGTTGGCGCCGGCGCGGGGGCGGCAGAGTCGCCGGCCAGGACGGCGGT1160.18895277809450897No Hit
GAGTGAATGGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAA1130.1840660683162027No Hit
TCCACGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGCCGCCGCC1120.1824371650567673No Hit
GCAATTGGAGCCATTTATTCTCCTGGCTCAACGTAAAGAAAAAGAAAGAAG1090.17755045527846103No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC1020.16614813246241306No Hit
CCACGATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCGTCGCCGCCGCCT920.14985909986805881No Hit
GCTATCATGAGGGAGCGGGTCGGGGACCGGCTGCCAAGCTTCACAGAGCAG910.1482301966086234No Hit
CTCATCTTCCCTCTTCCCCTACATGAGTAGGCGTTCTCCTTGTGCTCTCTC830.13519897053314003No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC820.13357006727370463No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC810.1319411640142692No Hit
GATATATAGCCATGTAAAAGTGCATGGCCATGCATGCGTGCATGGCAAAAA790.12868335749539836No Hit
GCCAACCAGCGGGTCCTTCGCCGTGGCACCAGCCGTCGGCGCCGTGGTCGG780.12705445423596293No Hit
CCTTGTAGTCTACGAAGTGCAGGCCGAACCGAGAAGTGTAGCCACTAGCCC780.12705445423596293No Hit
GAGTGAATGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG760.12379664771709209No Hit
CCTCCTGTGCTTGTCTTCTCTTTCTTCTTCCCTGAGGTTACTGCAAGTAGA760.12379664771709209No Hit
TGTATAGCCTATTATTCTTCAAGAAAACATGTTTTATTATTGATGAGGTGC750.12216774445765666No Hit
AGTGAATGGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAG710.11565213141991497No Hit
ACTCATGTAGGGGAAGAGGGAAGATGAGAGGGAGACGTCTGTTTTGTTTCA710.11565213141991497No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC690.11239432490104412No Hit
CCATCCCATGAGAGATCAACACAGACAAGACCAAGGGACAAGGACTTCTTC690.11239432490104412No Hit
TCATTTAGGAGACGATTAAAAGATACACTGGATGAGAACGTGCATGGCAGC660.10750761512273786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)