FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165226
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14640.8860590948155859No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6700.40550518683500175No Hit
ACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAAC3490.211225836127486No Hit
TACATGAGTAGGCGTTCTCCTTGTGCTCTCTCCTTCTTCTTCTCTTTCGAA3420.20698921477249346No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT3270.19791074044036655No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCT3260.19730550881822476No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC3130.1894374977303814No Hit
ACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCA3130.1894374977303814No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG3010.1821747182646799No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA2950.17854332853182914No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA2910.17612240204326196No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA2850.1724910123104112No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC2590.15675499013472458No Hit
GGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTGT2250.13617711498190357No Hit
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTA2200.1331509568711946No Hit
CCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAG2140.12951956713834384No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAAC1890.114388776584799No Hit
CCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCT1880.1137835449626572No Hit
GATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC1880.1137835449626572No Hit
GCTATCATGAGGGAGCGGGTCGGGGACCGGCTGCCAAGCTTCACAGAGCAG1880.1137835449626572No Hit
GGTATAGAATGGGGTCTCCTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGA1870.11317831334051542No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC1830.11075738685194823No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC1790.10833646036338107No Hit
GTGAATGGGGAGGTCGGCATAGAGAAAGAGAAAGCAGAAAGAAGAAAAAGC1740.1053103022526721No Hit
GCTTAGCACAGGGCTGCAATTGTCGTCGCCGTTAACCCGTCCACGATGGAG1710.10349460738624673No Hit
GCTATGTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGA1700.10288937576410492No Hit
CCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATC1690.10228414414196313No Hit
AGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGT1680.10167891251982132No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1660.10046844927553776No Hit
TGTATAGCCTATTATTCTTCAAGAAAACATGTTTTATTATTGATGAGGTGC1660.10046844927553776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)