FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences906264
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA18900.20854850242313497No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA18240.20126585630677155No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC17780.19619007264991217No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT14970.16518365509387992No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC13520.14918390226247538No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10640.11740508284561672No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG10440.11519822038611265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)