FastQCFastQC Report
Wed 8 May 2024
EGAF00007544194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267122
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47031.7606187434954814No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23210.8688913679891586No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7450.2788987803325821No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5460.20440098531757026No Hit
GAGTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAA4360.16322129963088028No Hit
CTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTC3240.12129289238625048No Hit
CATCTTGAGGTGGGTTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCC2950.11043642979612313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)