FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1247523
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTACATAGCTACCCAGCGATGCTCTTGGCAGAACAACTGGTACACCAGC170981.370555893558676No Hit
CATCTTGAGGTGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCC157111.259375578646646No Hit
GTTATCCCCAGGGTAGCTTTTATCCGTTGAGCGATGGCCCTTCCATACGGA131841.056814182985003No Hit
CCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGTATAAGGGAGCT102880.8246741743438799No Hit
GGGGATAACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGGTTTG102820.8241932212873029No Hit
GATAGGTAGGAGCCTATGACCTCGGGACGCCAGTTTCGAGTGAGGCGTTGT102610.8225098855892837No Hit
GCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGACTAC65960.5287277268635527No Hit
GATAGGTTATCCCTATCGGAGACAGTGTCTGACGGGCAGTTTGACTGGGGC59350.4757427317973296No Hit
ATCTTGAGGTGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCT58060.465402241080926No Hit
CCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGCACGCGAGCTGGGTTCAG58000.46492128802434907No Hit
CCTAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATC56440.45241650855334925No Hit
CCCGGAGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGC50750.4068061270213055No Hit
TCCCTACATAGCTACCCAGCGATGCTCTTGGCAGAACAACTGGTACACCAG47620.38171640923654315No Hit
GCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCCGTC44720.3584703448353257No Hit
CACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGG41120.32961316144071096No Hit
GTGAAGATGCAGGTTACCCGCGACAGGACGGAAAGACCCCATGGAGCTTTA41020.3288115730130827No Hit
CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGC39210.3143028224730125No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36130.28961389890206435No Hit
TCTTGAGGTGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCTA35630.2856059567639234No Hit
GATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGC29240.23438445623848217No Hit
CCTACCTATCCTGTACATGTGGTACAGATACTCAATATCAAACTGCAGTAA26940.21594792240303387No Hit
AACCCTTGGGACCGACTACAGCCCCAGGATGCGACGAGCCGACATCGAGGT26830.21506617513264284No Hit
ACATAGCTACCCAGCGATGCTCTTGGCAGAACAACTGGTACACCAGCGGTA25860.20729076738464944No Hit
GCTTGACTGCGAGAGCTACAACTCGAGCAGGGACGAAAGTCGGGCTTAGTG25090.20111853649191236No Hit
TGTGTTATGGCTACTCTAACCCAGATAGGTTATCCCTATCGGAGACAGTGT22880.18340343224132943No Hit
GTGTTATGGCTACTCTAACCCAGATAGGTTATCCCTATCGGAGACAGTGTC22080.17699072482030392No Hit
CCCTGGGGATAACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGG21890.17546770680781035No Hit
CCCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAG21540.17266214731111168No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20980.16817325211639383No Hit
ACCTTTTAGGAGGCGACCGCCCCAGTCAAACTGCCCGTCAGACACTGTCTC20900.1675319813742913No Hit
CCATTCTGAGGGAACCTTTGGGCGCCTCCGTTACCTTTTAGGAGGCGACCG20690.1658486456762721No Hit
GACTTTCGTCCCTGCTCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTATAC20520.16448594534930416No Hit
GCGACGGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCGCGT19640.15743196718617614No Hit
GCGGTAAGTCCACTCTGGTCCTCTCGTACTAGGAGCAGATCCTCTCAAATT15640.12536843008104862No Hit
GATCACTAAGCCCGACTTTCGTCCCTGCTCGAGTTGTAGCTCTCGCAGTCA15250.12224223521329868No Hit
GCTTAGTGATCCGGTGGTTCCGTATGGAAGGGCCATCGCTCAACGGATAAA15060.12071921720080511No Hit
CTCGTACTAGGAGCAGATCCTCTCAAATTTCCTACGCCCGCGACGGATAGG14870.11919619918831156No Hit
CCTACATAGCTACCCAGCGATGCTCTTGGCAGAACAACTGGTACACCAGCG14380.11526841589293343No Hit
CCCAGATAGGTTATCCCTATCGGAGACAGTGTCTGACGGGCAGTTTGACTG14380.11526841589293343No Hit
ACTACAGCCCCAGGATGCGACGAGCCGACATCGAGGTGCCAAACCTCCCCG13720.10997793227058739No Hit
GATAGGTATGGTAGGAGAGCGTTCTATGTGCGAAGAAGGTGTACCGTGAGG13330.10685173740283746No Hit
ACGAAAGTCGGGCTTAGTGATCCGGTGGTTCCGTATGGAAGGGCCATCGCT13170.10556919591863236No Hit
GAGTACATGGGACGAAAGGCGTAATGATTTGGGCACTGTCTCAACGAGAGA13010.10428665443442728No Hit
CCGGAGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCT12950.10380570137785035No Hit
TGGGGATAACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGGTTT12910.10348506600679906No Hit
GATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCT12620.10116045956667732No Hit
TCCATACGGAACCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTCGAGT12580.10083982419562605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)