FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540066
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17640.3266267456199798No Hit
GTTAATATTCCGGCACCTGGATGTGGATTCTCCACGGCAACGTAACTGAAC11290.2090485236989553No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10420.19293938148300394No Hit
ACTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAA9170.16979406220721172No Hit
CCTAAGACATAGGGTAGTTCCGTTTGAAAGTGCGCCCTCGTGCGCCGTCCG7950.1472042305940385No Hit
CCTGCTCCAGGGGCTTCCCCCCAAGGCCCAACGTGCCCGACCCTTAGAGCC6110.11313432062007235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)