FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences301376
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAACATACAGGCAAATTTGTATTCTGTGAGTTTCTCACACCCTCACACT5660.18780526651093649No Hit
ACAAAACATACAGGCAAATTTGTATTCTGTGAGTTTCTCACACCCTCACAC5630.18680983223614356No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4680.15528774686770017No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3120.10352516457846678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)