FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences779457
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT108771.395458633381957No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50010.6416004988087861No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20160.25864159280114235No Hit
ATGTTGTAGCCACAGCTGGAGCCTGAGTCCGCTGCACGGAGACTCTGGTGT18690.23978230999272568No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16080.20629746092472068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)