FastQCFastQC Report
Fri 10 May 2024
EGAF00007544559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7477
Total Bases381.3 kbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG730.9763274040390532No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT260.3477330480139093No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCT210.28086130801123443No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC170.22736391600909459No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC170.22736391600909459No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT160.21398956800855956No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA160.21398956800855956No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACT160.21398956800855956No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC150.2006152200080246No Hit
CTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTA120.16049217600641968No Hit
GTTTATTGAGATGGTTTCCCACTCATCTTGACTCAGAGTGCTTTTAGTGC110.14711782800588472No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGA110.14711782800588472No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC110.14711782800588472No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCT100.13374348000534975No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGC100.13374348000534975No Hit
CTTTATTTAAGGGCTTTCTTACAACATACTGGCGGACATCATCTTCTTTA90.12036913200481478No Hit
GAGTGAATGGGGCTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTC90.12036913200481478No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC90.12036913200481478No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGG90.12036913200481478No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC90.12036913200481478No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCAT80.10699478400427978No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG80.10699478400427978No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCC80.10699478400427978No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC80.10699478400427978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)