FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534575
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC50890.9519711920684656No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30070.5625029228826638No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG15990.29911612028246737No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13350.24973109479493055No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA10210.19099284478323902No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG9200.1720993312444465No Hit
CCTACGTTTACCTGTCCATGTCTTACTACTTTGACCGCGATGATGTGGCTT8620.16124959079642706No Hit
GCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGA7160.13393817518589532No Hit
GCTCATTCAGGTAATGTGTCTCAATGAAGTCACACAAATGGGGGTCATTTT5650.10569143712294814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)