FastQCFastQC Report
Wed 8 May 2024
EGAF00007544567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences235973
Total Bases12 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG65252.765146860022121No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31451.3327795976658345No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCT14750.6250715124187937No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13970.5920168832874948No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGA12160.515313192611019No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACT10440.4424234976035394No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAAC7610.32249452267844203No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCT7260.307662317299013No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAG5590.23689150877430892No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAG5470.23180618121564756No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG5270.22333063528454525No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3940.16696825484271505No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCT3830.1623067045806088No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTA3570.15128849487017584No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCAT3420.14493183542184912No Hit
ATCCCATCTGATATCATGACACACTGATAAACGATTAGCCATTGCAAGCC3050.1292520754493099No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCG3000.1271331889665343No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCG2960.12543807978031385No Hit
GACAAGAGCCAGTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGT2810.11908142033198713No Hit
ACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAAATAAA2770.11738631114576667No Hit
GCATGACGGCAAGTGCAAGTGCGGCGCCGCCTGCGCCTGCACCGACTGCA2650.1123009835871053No Hit
GCCCGAATTATTAGAGTACATAGCCACACACCTTCTTCTACTTCCTTTTT2510.1063681014353337No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2410.10213032846978255No Hit
CTTCACGCACTGGCTCTTGTCAACGCAGTCGCAGTTGCCGCAGGTCGACA2400.10170655117322745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)