FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences235973
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC65222.7638755281324556No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24701.0467299224911324No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG14700.6229526259360181No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA12150.514889415314464No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10470.4436948294932047No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG10420.4415759430104292No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA7610.32249452267844203No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG7210.30554343081623747No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC5590.23689150877430892No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT5470.23180618121564756No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC5250.22248308069143505No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC3830.1623067045806088No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3650.15467871324261676No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA3570.15128849487017584No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG3370.14281294893907354No Hit
ATCCCATCTGATATCATGACACACTGATAAACGATTAGCCATTGCAAGCCC3050.1292520754493099No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCGA3000.1271331889665343No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT2960.12543807978031385No Hit
GACAAGAGCCAGTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTT2810.11908142033198713No Hit
ACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAAATAAAA2770.11738631114576667No Hit
GCATGACGGCAAGTGCAAGTGCGGCGCCGCCTGCGCCTGCACCGACTGCAA2650.1123009835871053No Hit
GCCCGAATTATTAGAGTACATAGCCACACACCTTCTTCTACTTCCTTTTTT2510.1063681014353337No Hit
CTTCACGCACTGGCTCTTGTCAACGCAGTCGCAGTTGCCGCAGGTCGACAT2390.10128277387667234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)