FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences241945
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC68002.81055611812602No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27161.122569178945628No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG11970.49474054020541863No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11780.48688751575771355No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG10540.43563619830953315No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA9960.411663807890223No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG7600.31412097790820226No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA6200.25625658724090183No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT5780.23889727004071173No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC4950.20459195271652647No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC3880.16036702556366117No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG3490.14424765959205604No Hit
GGTAGGTAGGTAGGAGATGATTCATCAACCTTACAAGTTAGTTTCTAGAAG3360.13887453760152102No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT3220.13308809853479095No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3040.12564839116328091No Hit
GGTCAGGTGGGGCTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGA2940.12151522040133088No Hit
GCATGACGGCAAGTGCAAGTGCGGCGCCGCCTGCGCCTGCACCGACTGCAA2840.11738204963938086No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC2760.11407551302982083No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCGA2750.11366219595362581No Hit
ACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAAATAAAA2670.1103556593440658No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2640.10911570811548078No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA2580.10663580565831077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)