FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269708
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC60002.2246281163332196No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33201.2309608910377148No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14260.5287199489818619No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG11600.43009476915775574No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA11400.42267934210331176No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG9700.35964821214053716No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG9350.34667121479526003No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA6590.24433832144393194No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT5960.22097972622243314No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC5010.18575644771382382No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA4160.15424088273243655No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC3570.13236537292182657No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC3530.13088228751093775No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC3430.1271745739837157No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG3420.1268038026309935No Hit
CACCTTCTTCTTCCGTTTTTTTTGTTCTTTTGTTTTTTATGCATTGCAAAC3320.12309608910377148No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT2980.11048986311121657No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA2840.10529906417310574No Hit
GACAAGAGCCAGTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTT2820.10455752146766133No Hit
GCATGACGGCAAGTGCAAGTGCGGCGCCGCCTGCGCCTGCACCGACTGCAA2710.10047903658771708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)