FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135002
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC37512.778477355891024No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14401.066650864431638No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG8790.651101465163479No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG6940.5140664582746922No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6110.4525858876164798No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA5630.41703085880209184No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG3420.253329580302514No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA3020.2237003896238574No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC2880.2133301728863276No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC2850.21110798358542834No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT2730.2022192263818314No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2040.1511088724611487No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2040.1511088724611487No Hit
GGTAGGTAGGTAGGAGATGATTCATCAACCTTACAAGTTAGTTTCTAGAAG2000.14814595339328304No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCGA1970.14592376409238383No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA1830.135553547354854No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC1670.12370187108339135No Hit
TCTTCTACTTCCTTTTTTTTTTTGTTCTTTTGCTTTTTATGCATTGCAAAC1600.11851676271462647No Hit
ACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAAATAAAA1570.1162945734137272No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG1470.10888727574406304No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC1420.10518362690923097No Hit
GCCCGAATTATTAGAGTACATAGCCACACACCTTCTTCTACTTCCTTTTTT1390.10296143760833174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)