FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences234890
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC51792.204861850227766No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27391.1660777385159011No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG12730.5419558091021329No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11630.49512537783643407No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA9940.4231768061645877No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG8570.3648516326791264No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG5440.23159776916854696No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA5180.22052875814210907No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT4580.194984886542637No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC4490.19115330580271617No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT4410.18774745625611988No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA4110.17497552045638384No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC3900.1660351653965686No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG3170.13495678828387758No Hit
GGTCAGGTGGGGCTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGA2930.12473923964408873No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA2850.12133339009749244No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCGA2790.11877900293754523No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2630.11196730384435269No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC2590.11026437907105453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)