FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences948155
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18290.1929009497392304No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA12350.13025296496880784No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT11760.12403035368689719No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA10980.11580385063623565No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC9700.10230394819412438No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG9680.10209301221846638No Hit
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC9600.10124926831583445No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC9540.10061646038886046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)