FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214474
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC42441.9787946324496208No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22101.0304279306582615No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9440.44014659119520316No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG8760.4084411164057182No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA8270.38559452427800106No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG6960.3245148596100227No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG4580.21354569784682526No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT3970.18510402193272843No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC3760.17531262530656397No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA3590.1673862566091927No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT3430.15992614489401977No Hit
GGTCAGGTGGGGCTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGA3090.1440734074992773No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3010.14034335164169082No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC2940.13707955276630268No Hit
CCCCGGCGCCCCTTTCCAGGGGACTTGGGCCCGGTCCGTCGCTGAGGACGC2480.11563173158518048No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2370.1105029047809991No Hit
GGTAGGTAGGTAGGAGATGATTCATCAACCTTACAAGTTAGTTTCTAGAAG2370.1105029047809991No Hit
TTGTGGTGTCTGGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGT2350.10957039081660247No Hit
GATCTTCTGTGAAGGGTTCGAGTTGGAGCATGCATGTCGGGACCCGAAAGA2240.10444156401242109No Hit
GCTTGAGAATCGGGCGGCTACGTCGTCTGAATTGTAGTCTGGAGAAGCGTC2230.10397530703022279No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC2200.10257653608362785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)