FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences227657
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC54672.4014196796057226No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18610.8174578422802725No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG10510.46165942624210987No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG9500.4172944385632772No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA8590.3773220239219528No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7460.3276859485981103No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA4590.2016191024216255No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG4310.18931989791660261No Hit
GGTAGGTAGGTAGGAGATGATTCATCAACCTTACAAGTTAGTTTCTAGAAG4230.18580583948659607No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT4180.18360955296784195No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC3800.1669177754253109No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC3600.1581326293502945No Hit
ACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAAATAAAA2780.12211353044272744No Hit
GCACCGACTGCAAGTGTGGCAACTGAGAAGCACTTGTGTCACTACCACTAA2650.11640318549396679No Hit
ATCCCATCTGATATCATGACACACTGATAAACGATTAGCCATTGCAAGCCC2610.11464615627896353No Hit
CCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTCGACAGCGCCTCGT2490.10937506863395371No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2340.10278620907769144No Hit
TCTCAAGTCACATTTATTGTCATGGCATGCACCATGTTCTTATCCCAAGAA2300.10102917986268817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)