FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193501
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTGC47522.455801262008982No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20821.0759634317135311No Hit
GCTTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG10110.5224779200107493No Hit
GTGCGTGAAGAAGGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAA8960.4630467026010202No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8690.4490932863396055No Hit
GGATAGATAGGAGAGTTGTAACACAGGACAGAGATAACACAGATGATACTG8620.44547573397553497No Hit
GCTTTCTTCGAGCCTCTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTG6280.32454612637660785No Hit
GCGGCAACTGCGACTGCGTTGACAAGAGCCAGTGCGTGAAGAAGGGAAACA5090.2630477361874099No Hit
GCTTCTTCGAGCCTTTTCGCCTTCCTTCCTCGTCTAACCATGTCGACCTGC4030.20826765753148563No Hit
ACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATGACGGCAAGT3910.20206613919307911No Hit
CCTCGTCTAACCATGTCGACCTGCGGCAACTGCGACTGCGTTGACAAGAGC3790.1958646208546726No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2990.15452116526529577No Hit
GGGAAACAGCTACGGTATCGATATTGTTGAGACCGAGAAGAGCTACGTCGA2410.1245471599629976No Hit
GCAGTCGGTGCAGGCGCAGGCGGCGCCGCACTTGCACTTGCCGTCATGCTC2280.11782884842972388No Hit
AGAAGAGCTACGTCGACGAGGTGATCGTTGCCGCAGAAGCTGCCGAGCATG2210.11421129606565342No Hit
GCATGACGGCAAGTGCAAGTGCGGCGCCGCCTGCGCCTGCACCGACTGCAA2130.11007695050671573No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2120.10956015731184852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)