FastQCFastQC Report
Tue 7 May 2024
EGAF00007544719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58445
Total Bases2.9 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4820.8247069894772863No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2200.376422277354778No Hit
TATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCT960.16425699375481223No Hit
CTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTGA810.1385918384806228RNA PCR Primer, Index 10 (96% over 28bp)
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG600.10266062109675764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)