FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007544763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231400
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAAGGTATCGTTATCTGAATACATAGGGTAACGAGGCGAACCGGGTGA13270.5734658599827139No Hit
GCTATGGCCAGCCTTTCCAAGCTGTTCCGTTATGTCTTGTGCTATCACTAA9990.4317199654278306No Hit
GGTTGAGCCCGGGGATTTCACAACTGTCTTACATCACCGCCTGCGCACGCT8170.3530682800345722No Hit
GGCAGCAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCCATGC5430.23465859982713913No Hit
GCGATAAGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGA5160.22299049265341403No Hit
CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGC4890.21132238547968887No Hit
CATATTCAGACAGGATTTCTCGTGTCCCGCCCTACTTGTCGTTAGCTCAGT4830.2087294727744166No Hit
GGGCTCAACCTGGGAACTGCATCTGTGACTGCATCGCTGGAGTACGGCAGA4510.19490060501296455No Hit
ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGG4470.19317199654278305No Hit
GCATGAACGGGTTGCAAAAAATCGGTGGCTGCGACTGTTTATTAAAAACAC3680.15903197925669835No Hit
GCATTGCTGCAGGGTACGCTTTATCCCGAAGTTACAGCGTCAATTTGCCTA3460.1495246326707001No Hit
GTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGTGCATG3450.14909248055315472No Hit
GGCCATAGCGGGTGATAGCCCCGTACGTGAAATGACCTGTGTGGTACTGAG3390.14649956784788246No Hit
CCCAATCGTGGGGGATAACGCAGCGAAAGCTGTGCTAATACCGCATACGAT3370.1456352636127917No Hit
CCTAATACGTAGTTAAGTTGAACAAACGAGGTGAGACTTCAATAACAGCCA3330.1439066551426102No Hit
ACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTG3310.14304235090751943No Hit
GCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTATTAGTGTGAAGT3280.14174589455488332No Hit
TCTACCTGTGTCGGTTTGCGGTACTGGCTGCTATACTCGCTTTTCTTGGCA3150.13612791702679342No Hit
CGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA2950.1274848746758859No Hit
ACTGATCGCAGGCTTGGTGGGCCTCTACCCCACCAACTACCTAATCAGACG2810.12143474503025065No Hit
CCATATTCAGACAGGATTTCTCGTGTCCCGCCCTACTTGTCGTTAGCTCAG2730.11797752808988762No Hit
CCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGT2700.11668107173725151No Hit
CGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATTAGCCCTCTTTATT2680.11581676750216074No Hit
GCCGTTTACTGGGACTTCAATCAAGAGCTTGCACCCCATCATTTAATCTTC2510.10847018150388937No Hit
CCTACCTGTGTCGGTTTCAGGTACAGGTGATTCTGGTGTTGGATCTTGCTT2490.10760587726879862No Hit
GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATC2490.10760587726879862No Hit
TCTAATAAAGAGGGCTAATGACGGTACCGTAAGAATAAGCACCGGCTAACT2320.10025929127052723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)