FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1731551
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATTTAGAGCAGCATTCCCAAACTACTCGACTCGTCGAAGGAGCTTCAC29160.16840393381425092No Hit
CCCTTAGGACACCTGCGTTATGGTTTTACAGATGTGCCGCCCCAGCCAAAC28160.16262876461623135No Hit
GTAGAATAGGAGGGAGCTTCGGCGCCGGTGAAATACCTCTACTCCTATTGT19470.1124425442854412No Hit
GCCGTTTACCCGCGCTTGGTCGAATTGCTTCGCTTTGACAATTCAGAGCAC19250.1111720070618769No Hit
GTGAAGGGCATGGGGTTCCACAGAGGGAAGGCCCGGCCAGACCAGTGCACG18410.10632086493554045No Hit
GCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTG18350.10597435478365927No Hit
GCAGAAGTGCTGGGCTCTTCCAGCCATTAAACCCTAGCTCCGGACAAACCG18150.10481932094405537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)