FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007544879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences638250
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13370.20947904426165292No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8250.12925969447708577No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA7340.11500195848021937No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC6860.10748139443791618No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6840.1071680376028202No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6560.10278104191147669No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC6480.10152761457109284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)