FastQCFastQC Report
Wed 8 May 2024
EGAF00007544992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007544992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22830268
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1070580.4689301062957299No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG551580.24160031761344195No Hit
TGCTGCTCAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAA311140.13628398930752805No Hit
TGTAGGTTCAGACGTGTGCTCTTCCGAACCTACAN248870.10900879481572445Illumina Multiplexing PCR Primer 2.01 (95% over 23bp)
TGCTGCTCAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAA241610.105828805864215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)