FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579429
Sequences flagged as poor quality0
Sequence length40-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC19090.3294622809697133No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT14570.2514544491214627No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC10670.18414680659752963No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6350.10959064872486533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)