FastQCFastQC Report
Wed 8 May 2024
EGAF00007545005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences628852
Total Bases31.7 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC20180.3209022154656421No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15760.25061540712282065No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC11070.17603506071380864No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA9410.1496377526031562No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC6680.1062253121561194No Hit

[OK]Adapter Content

Adapter graph