FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences628852
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC20170.32074319553726477No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15750.2504563871944432No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC11070.17603506071380864No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT9390.14931971274640138No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6680.1062253121561194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)