FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences594914
Sequences flagged as poor quality0
Sequence length38-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC17790.29903481847796487No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT13530.2274278299048266No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9960.167419156382267No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8860.14892908891032988No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6340.10657002524734668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)