FastQCFastQC Report
Wed 8 May 2024
EGAF00007545036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477983
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC13200.2761604492209974No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9680.2025176627620648No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC7360.15398037168685916No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA6660.13933549937968503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)