FastQCFastQC Report
Wed 8 May 2024
EGAF00007545047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328247
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC12730.38781771044365976No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9760.2973370662945891No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5010.15262896538277576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)