FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361271
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC19070.5278585881512771No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT14040.38862792751148034No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT9900.27403251298886433No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9760.2701573057344763No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6250.17300032385660627No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCC4400.12179222799505081No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4330.11985462436785682No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC3890.10767540156835173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)