FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488764
Sequences flagged as poor quality0
Sequence length38-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC18700.38259773633082633No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT13480.27579772651013573No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9290.1900712818456351No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8440.17268047564877936No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6240.12766897725691745No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4920.1006620782218003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)