FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474081
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC20810.43895452464874146No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15890.3351747908057906No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC11230.23687935184071918No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT9210.19427059932796295No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG7170.15123997797844674No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT5810.12255289707876925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)