FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100113
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC6560.655259556700928No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT4990.49843676645390705No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC2590.2587076603438115No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT1870.18678892851078283No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT1790.17879795830711295No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG1670.16681150300160819No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC1210.12086342433050652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)