FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94263
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC6050.641821287249504No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT4530.480570319213265No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC2210.234450420631637No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT1590.16867699945896056No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT1540.16337269129987375No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG1230.13048598071353554No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC970.10290357828628412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)