FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295414
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC12440.4211039422640768No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT10260.3473091999702113No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6420.21732213097551234No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5440.1841483477424902No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG4380.14826650057207852No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3480.11780078127644593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)