FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421300
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC16860.4001898884405412No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT12770.30310942321386186No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC8070.1915499643959174No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5910.14028008544979825No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG4610.10942321386185616No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4520.10728696890576787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)