FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260559
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC10230.39261741102782866No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT7700.2955184814187958No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC3520.13509416293430662No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2910.11168295856216826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)