FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166146
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC9590.5772031827428888No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT6930.41710302986529924No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC3450.20764869452168572No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2410.14505314602819208No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2310.13903434328843306No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG1890.11375537178144524No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC1760.10593092821975852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)