FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464969
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC15910.3421733491910213No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT11770.25313515524690894No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC7300.15699971395942525No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6780.14581617269108263No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG5510.11850252382416893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)