FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464969
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC15750.33873225956999287No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT11930.2565762448679374No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC7120.15312848813576818No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6520.14022440205691133No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG5440.11699704711496896No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4790.10301762052954068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)