FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436581
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC14890.34105927651455287No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT11340.2597456142159187No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6950.1591915360494387No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5970.13674438420361856No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG5180.11864923118504929No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4400.1007831307363353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)