FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211989
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC12380.5839925656519914No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9520.44907990508941503No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5270.24859780460306904No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT3090.14576228011830802No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2810.13255404761567818No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2660.1254782087749836No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC2240.10566586002103884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)