FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222670
Sequences flagged as poor quality0
Sequence length41-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC10330.463915210850137No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT8270.3714016257241658No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC4570.20523644855615933No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT3360.15089594467148695No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3070.13787218754210265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)